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Plant Cell Atlas Spatial Omics Workshop
Virtual Workshop
May 9, 2024
 

Objectives

 This virtual workshop on Spatial Omics will bring together world experts developing and using cutting edge Spatial Omics. Participants will hear about cutting-edge techniques developed for animal systems and the applications of advanced spatial omics methods on plant research. 

NOTE: This workshop will have 2 sessions with a 4 hour break in between. One from 7-9 AM PDT and one from 1-3 PM PDT. ​

Registration

Registration for the 2024 Plant Cell Atlas Spatial Omics Workshop is now closed.
​Recordings of the three public talks can be found on the PCA YouTube channel.
Date: May 9, 2024
Session 1

PDT - 7:00am - 9:00am
MDT - 8:00am - 10:00am
CDT - 9:00am - 11:00am
EDT - 10:00am - 12:00pm
CEST - 4:00pm - 6:00pm
GMT+8 - 10:00pm - 12:00am (5/10/2024)
Search for your time zone here.

Date: May 9, 2024
Session 2

PDT - 1:00pm - 3:00pm
MDT - 2:00pm - 4:00pm
CDT - 3:00pm - 5:00pm
EDT - 4:00pm - 6:00pm
CEST - 10:00pm - 12:00am (5/10/2024)
GMT+8 - 4:00am (5/10/2024) - 6:00am (5/10/2024)
Search for your time zone here.

Workshop Organizers and Speakers
Epidermal plasma membrane in green and nuclei (H2B-TFP) in blue, together with chlorophyll autofluorescence in red below in the mesophyll. Photo credit: Kate Harline (Roeder Lab)
Epidermal plasma membrane in green and nuclei (H2B-TFP) in blue, together with chlorophyll autofluorescence in red below in the mesophyll. Photo credit: Kate Harline (Roeder Lab)
Pin1-YFP (yellow) and DR5::RFP (red) in the maize shoot apex. Photo credit: Leiboff Lab
Pin1-YFP (yellow) and DR5::RFP (red) in the maize shoot apex. Photo credit: Leiboff Lab
Depth-coded image of microtubules in root hairs of the model grass, Brachypodium distachyon. Photo credit: Elison Blancaflor
 

Speakers

  • Rong Fan (Yale University, USA)
  • Stefania Giacomello (KTH Royal Institute of Technology/SciLife Lab, Sweden)
  • Travis Lee (Salk Institute for Biological Studies, USA)
  • Andrea Mair (Stanford University, USA)
  • Alex Monell (University of California, San Diego, USA)
  • Matthew Tucker (University of Adelaide, Australia)​
​Recordings of the three public talks can be found on the PCA YouTube channel.

Agenda

Session 1
7:00 - 9:00 AM PDT / 4:00 - 6:00 PM CEST

7:00 AM - 7:10 AM PDT
Introduction
​​
Moderator: Tatsuya Nobori
7:10 AM - 7:55 AM PDT
Plenary #1
Stefania Giacomello (KTH Royal Institute of Technology/SciLife Lab)
Talk Title: Host and host-pathogen transcriptomic studies at the spatial level

Abstract: Available here
Moderator: Tatsuya Nobori
7:55 AM - 8:15 AM PDT
Talk #1
Andrea Mair  (Stanford University)
Talk Title: Proximity labeling as an emerging strategy for identification of local proteomes and protein complexes in plants
Abstract:
Available here
​Moderator: Tatsuya Nobori
8:15 AM - 9:00 AM PDT
Plenary #2
Rong Fan (Yale University)
Talk Title: Spatial Multi-Omics Sequencing for Mapping Tissue Function, Aging, and Diseases

Abstract: Available here​
​
Moderator: Tatsuya Nobori

Session 2
1:00 - 3:00 PM PDT / 6:00 - 8:00 AM AEST (May 10)

1:00 PM - 1:05 PM PDT
Introduction
​Moderators: Trevor Nolan and Marta Peirats-Llobet​
1:05 PM - 1:30 PM PDT
Talk #2
Travis Lee (Salk Institute for Biological Studies)

​Talk Title: Spatial-omics in Plants: The How, When, Where, and Why
Abstract: Available here
​Moderators: Trevor Nolan and Marta Peirats-Llobet​
1:30 PM - 1:55 PM PDT
Talk #3
Alex Monell (University of California, San Diego)
Talk Title: Spatial Transcriptomics in Plants  - Computational Methods for Data Analysis
​
​
Abstract: Available here
Moderators: 
Trevor Nolan and Marta Peirats-Llobet​​
1:55 PM - 2:20 PM PDT
Talk #4
Matthew Tucker (University of Adelaide)
Talk Title: Using spatial transcriptomics to discover new genes influencing cereal grain development
​
Abstract: Available here
​
​Moderators: Trevor Nolan and Marta Peirats-Llobet​
2:20 PM - 3:00 PM PDT
Community discussion
​​
Moderators: Trevor Nolan and Marta Peirats-Llobet​
Protein bodies in maize endosperm, Marisa Otegui
Electron tomographic reconstruction of protein bodies in maize endosperm. Photo Credit: Marisa Otegui
Arabidopsis cotyledon, Flavia Bossi
Reconstruction of an Arabidopsis first leaf from a six-day old seedling. Photo Credit: Flavia Bossi
Developing maize aleurone cell, Marisa Otegui
Electron tomographic reconstruction of a developing maize aleurone cell. Photo Credit: Marisa Otegui
MICHIGAN STATE UNIVERSITY LAND ACKNOWLEDGEMENT
“The Plant Cell Atlas operates predominantly out of Michigan State University. We acknowledge that Michigan State University occupies the ancestral, traditional, and contemporary Lands of the Anishinaabeg – the Three Fires Confederacy of Ojibwe, Odawa, and Potawatomi peoples. We affirm Indigenous sovereignty and hold Michigan State University accountable to the needs of American Indian and Indigenous peoples.”

For questions about the PCA Initiative please contact us at [email protected].

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  • Home
  • About
    • Annual Report
    • Newsletter
    • People
    • Motivation
    • Goals
    • Milestones
    • Affilations
    • News >
      • Breaking News
      • Past News
    • Code of Conduct
    • Bylaws
    • Contact
  • Resources
    • Publications >
      • 2022 Plant Physiology Focus Issue
    • Tools and Repositories
    • PCA Videos
  • Events
    • Upcoming Events >
      • Spatial Metabolomics Workshop - March 2025
    • Previous Events
  • Opportunities
    • Job Posts
    • Fellowships
  • Outreach
    • JR Biotek-PCA Best Talk Winner
    • PCA Art Exhibit >
      • About
      • Plant Biotechnology
      • Black Plant Scientists
      • Bowie State University
      • Howard University
      • Morgan State University
    • Futurum Brochure
  • Blog