PLANT CELL ATLAS
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Introduction to Plant Cell Atlas

A ~20 minute presentation by Dr. Sue Rhee on the goals and vision of the Plant Cell Atlas initiative.

2021 Workshop Videos

1st PCA Symposium - December 9 & 10, 2021
Speaker: Dr. Yvon Jaillais (ENS Lyon, France)
Talk Title: Anionic phospholipids across scales: from plasma membrane nanodomains to plant development
Moderator: Dr. Shao-shan Carol Huang (New York University, US
Speaker: Dr. Hilde Nelissen (VIB-Ghent University, Belgium)
Talk Title: An in situ sequencing approach maps PLASTOCHRON1 at the boundary between indeterminate and determinate cells
Moderator: Dr. Shao-shan Carol Huang (New York University, USA)
Speaker: Dr. Mathew Lewsey (La Trobe University, Australia)
Talk Title: Gene regulatory dynamics of germinating from bulk tissue to single-cell resolution
Moderator: Dr. Samuel Leiboff (Oregon State University, USA)
Speaker: Dr. Camilla Ferrari (VIB-Ghent University, Belgium)
Talk Title: Identification of cell-type specific gene regulatory networks in plants using MINI-EX, a Motif-Informed Network Inference method based on single-cell EXpression data
Moderator: Dr. Kaisa Kajala (Utrecht University, The Netherlands)
Speaker: Dr. Michael Taylor (Pacific Northwest National Laboratory, USA)
Talk Title: Development of targeted single cell analysis and metabolic imaging of plants using high spatial resolution laser ablation electrospray ionization mass spectrometry
Moderator: Dr. Marc Libault (University of Nebraska-Lincoln, USA)
Spatial Metabolomics Workshop - October 19, 2021
Speaker: Dr. Theodore Alexandrov (EMBL)
Talk Title: METASPACE and SpaceM, tools for spatial single-cell metabolomics
Speaker: Dr. Hua Tian (Pennsylvania State University)
Talk Title: Successive high-resolution (H2O)n-GCIB and C60-SIMS imaging integrates spatial omics (metabolites, lipids and proteins) in single cells on frozen-hydrated tissues
Speaker: Dr. Young-Jin Lee (Iowa State University)
Talk Title: High-spatial resolution mass spectrometry imaging of plant metabolites with matrix-assisted laser desorption ionization
Spatial Proteomics Workshop - April 8, 2021
Speaker: Dr. Claire McWhite (Princeton University)
Talk Title: Mapping conserved protein complexes across plant species
Speaker: Dr. Nikolai Slavov (Northeastern University)
Talk Title: Mapping the transcriptome and proteome of tissues in 3D at single-cell resolution
Speaker: Dr. Ryan Kelly (Brigham Young University)
Talk Title: In-depth and high-spatial-resolution proteome profiling of plant tissues
Speaker: Dr. Julia Mergner (Technical University of Munich)
Talk Title: Protein expression profiling in Arabidopsis tissues
Single Cell Sequencing Workshop - February 23, 2021
Speaker: Dr. Mary Ghering (Massachusetts Institute of Technology)
Talk Title: Insights into endosperm development and gene imprinting at single nucleus resolution
Speaker: Dr. John Marioni (EMBL-European Bioinformatics Institute)
Talk Title: Computational challenges in single cell genomics

2020 Workshop Videos

1st PCA Workshop: Session 1 - May 15, 2020
Speakers: Dr. ​Seung Yon Rhee & Dr. ​David Ehrhardt (Carnegie Institution for Science)
Talk Title: Session 1 Introduction - Vision for Plant Cell Atlas
Speaker: Dr. Liwen Jiang (The Chinese University of Hong Kong)
Talk Title: Plant Cell Atlas - Organelle Biosynthesis
Speaker: Dr. Martin Jonikas (Princeton University)
Talk Title: Protein localizations and protein-protein interactions have transformed our understanding of the pyrenoid
Session 1 Q&A: Vision for Plant Cell Atlas
Speakers: Dr. Dominique Bergmann, Dr. Uta Paszkowski, Dr. Liwen Jiang, Dr. Martin Jonikas
Moderators: Dr. Sury Jha, Dr. Kangmei Zhao, Dr. Heather Meyer, and Dr. Jason Thomas
1st PCA Workshop: Session 2 - May 22, 2020
Speakers: Dr. Zhiyong Wang (Carnegie Institution for Science) and Dr. Ken Birnbaum (New York University)
Talk Title: Session 2 Introduction - Tools and Techniques for PCA
Speaker: Dr. Tess Branon (University of California, Berkeley)
Talk Title: TurboID - A new proximity labeling technology for proteomic mapping in plants
Speaker: Dr. Becky Bart (Donald Danforth Plant Science Center)
Talk Title: Tools and techniques for developing the Plant Cell Atlas - Non-model system edition
Speaker: Dr. Alexander Jones (Sainsbury Laboratory, Cambridge University)
Talk Title: The sonata from the symphony - hormone dynamics resulting from many cellular activities
Session 2 Q&A: Tools and Techniques for PCA
Speakers: Dr. Alexander Jones, Dr. Tess Branon, Dr. Markita Landry, Dr. Becky Bart
Moderators: Dr. Sury Jha, Dr. Renate Weizbauer, Dr. Jason Thomas, and Emily Fryer
1st PCA Workshop: Session 3 - June 2, 2020
Speaker: Dr. Heather Meyer & Dr. Sury Jha (Carnegie Institution for Science)
Talk Title: Session 3 Introduction - Broader Impacts, Infrastructure, and Community Building
Speaker: Dr. Nicholas Provart (University of Toronto)
Talk Title: Visualizing the Plant Cell Atlas
Speaker: Dr. George Bassel (University of Warwick)
Talk Title: Tissue modeling & multiplex data integration
Speaker: Dr. Amy Marshall-Colón (University of Illinois Urbana-Champaign)
Talk Title: Plant Cell Atlas Workshop: Crop Engineering
Speaker: Dr. Drew Endy (Stanford University)
Talk Topic: Synthetic Biology and Bio-based Economy
Session 3 Q&A: Broader Impacts, Infrastructure, and Community Building
Speakers: Dr. Nicholas Provart, Dr. George Bassel, Dr. Amy Marshall-Colón, Dr. Drew Endy
Moderators: Dr. Renate Weizbauer, Dr. Jason Thomas, Emily Fryer, and Dr. Kangmei Zhao
STANFORD LAND ACKNOWLEDGEMENT
“The Plant Cell Atlas operates predominantly out of the Carnegie Institution for Science's Plant Biology Department located at Stanford University. Stanford sits on the ancestral land of the Muwekma Ohlone Tribe. This land was and continues to be of great importance to the Ohlone people. Consistent with our values of community and inclusion, we have a responsibility to acknowledge, honor, and make visible the University’s relationship to Native peoples.”

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Carnegie Institution for Science
Department of Plant Biology
260 Panama St.
​Stanford, CA 94305
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Grant #'s: 1916797 & 2052590
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  • Home
  • About
    • People
    • Motivation
    • Goals
    • Milestones
    • Affilations
    • News >
      • Breaking News
      • Past News
    • Code of Conduct
    • Bylaws
  • Events
    • Upcoming Events
    • Previous Events
  • Resources
    • 2023 PCA Travel Award >
      • 2022 Awardees
    • Job Posts
    • Fellowships
    • Publications >
      • 2022 Plant Physiology Focus Issue
    • PCA Videos
    • Annual Report
  • Outreach
    • JR Biotek-PCA Best Talk Winner
    • PCA Art Exhibit >
      • About
      • Plant Biotechnology
      • Black Plant Scientists
      • Bowie State University
      • Howard University
      • Morgan State University
    • Futurum Brochure
  • Contact