Objectives |
Registration |
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This workshop is designed to introduce the broader plant science community to various single cell sequencing techniques. Experts will be showcasing the use single cell sequencing methods in plants and new cutting edge technologies being used in studies on mice and humans.
The workshop agenda can be found below. All talks will consist of a 20 minute talk followed by 5 minutes of questions. Workshop Organizers and Speakers |
Registration for the PCA Single Cell Sequencing Workshop is now closed.
A Zoom link will be provided to registrants the day before the workshop. You can find recordings of two of the talks on the Plant Cell Atlas YouTube Channel. Links to the individual talks can be found in the agenda. |
Agenda
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8:00 AM - 8:05 AM PST
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Introduction
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8:05 AM - 8:30 AM PST
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Bert De Rybel (VIB, Ghent University)
Talk Title: Single Cell RNA-seq: insights into cellular communication during environmental responses in Arabidopsis |
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8:30 AM - 8:55 AM PST
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Mary Gehring (Massachusetts Institute of Technology)
Talk Topic: Single Nuclei RNA-seq: Spatial bias of imprinted genes in the endosperm in Arabidopsis |
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8:55 AM - 9:20 AM PST
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John Marioni (EMBL-European Bioinformatics Institute)
Talk Topic: Mining information from pseudo-time trajectories in Mouse |
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9:20 AM - 9:35 AM PST
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Break
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9:35 AM - 10:00 AM PST
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Bob Schmitz (University of Georgia)
Talk Topic: Single Cell ATAC seq: Deciphering cis-regulatory logic in Maize |
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10:00 AM - 10:25 AM PST
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Rahul Satija (New York Genome Center, NYU)
Talk Title: Integrated analysis of multimodal single-cell data |
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10:25 AM - 11:00 AM PST
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Panel Discussion: Future Outlook for Single Cell Omics in Plants
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