PLANT CELL ATLAS
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Plant Cell Atlas Single Cell Sequencing ​Workshop
Virtual Workshop
February 23, 2021

 

Objectives

Registration

​This workshop is designed to introduce the broader plant science community to various single cell sequencing techniques. Experts will be showcasing the use single cell sequencing methods in plants and new cutting edge technologies being used in studies on mice and humans.

The workshop agenda can be found below. All talks will consist of a 20 minute talk followed by 5 minutes of questions.

Workshop Organizers and Speakers

Registration for the PCA Single Cell Sequencing Workshop is now closed.

A Zoom link will be provided to registrants the day before the workshop.

You can find recordings of two of the talks on the Plant Cell Atlas YouTube Channel. Links to the individual talks can be found in the agenda.

Epidermal plasma membrane in green and nuclei (H2B-TFP) in blue, together with chlorophyll autofluorescence in red below in the mesophyll. Photo credit: Kate Harline (Roeder Lab)
Epidermal plasma membrane in green and nuclei (H2B-TFP) in blue, together with chlorophyll autofluorescence in red below in the mesophyll. Photo credit: Kate Harline (Roeder Lab)
Pin1-YFP (yellow) and DR5::RFP (red) in the maize shoot apex. Photo credit: Leiboff Lab
Pin1-YFP (yellow) and DR5::RFP (red) in the maize shoot apex. Photo credit: Leiboff Lab
Depth-coded image of microtubules in root hairs of the model grass, Brachypodium distachyon. Photo credit: Elison Blancaflor
 

Agenda

8:00 AM - 8:05 AM PST
Introduction
8:05 AM - 8:30 AM PST
Bert De Rybel (VIB, Ghent University)
 Talk Title: Single Cell RNA-seq: insights into cellular communication during environmental responses in Arabidopsis
8:30 AM - 8:55 AM PST
Mary Gehring (Massachusetts Institute of Technology)
Talk Topic: Single Nuclei RNA-seq: Spatial bias of imprinted genes in the endosperm in Arabidopsis
8:55 AM - 9:20 AM PST
John Marioni (EMBL-European Bioinformatics Institute)
Talk Topic: Mining information from pseudo-time trajectories in Mouse
9:20 AM - 9:35 AM PST
Break
9:35 AM - 10:00 AM PST
Bob Schmitz (University of Georgia)
Talk Topic:
Single Cell ATAC seq: Deciphering cis-regulatory logic in Maize
10:00 AM - 10:25 AM PST
Rahul Satija (New York Genome Center, NYU)
Talk Title: 
Integrated analysis of multimodal single-cell data
10:25 AM - 11:00 AM PST
Panel Discussion: Future Outlook for Single Cell Omics in Plants
Protein bodies in maize endosperm, Marisa Otegui
Electron tomographic reconstruction of protein bodies in maize endosperm. Photo Credit: Marisa Otegui
Arabidopsis cotyledon, Flavia Bossi
Reconstruction of an Arabidopsis first leaf from a six-day old seedling. Photo Credit: Flavia Bossi
Developing maize aleurone cell, Marisa Otegui
Electron tomographic reconstruction of a developing maize aleurone cell. Photo Credit: Marisa Otegui
STANFORD LAND ACKNOWLEDGEMENT
“The Plant Cell Atlas operates predominantly out of the Carnegie Institution for Science's Plant Biology Department located at Stanford University. Stanford sits on the ancestral land of the Muwekma Ohlone Tribe. This land was and continues to be of great importance to the Ohlone people. Consistent with our values of community and inclusion, we have a responsibility to acknowledge, honor, and make visible the University’s relationship to Native peoples.”

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Carnegie Institution for Science
Department of Plant Biology
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​Stanford, CA 94305
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Grant #'s: 1916797 & 2052590
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  • Home
  • About
    • People
    • Motivation
    • Goals
    • Milestones
    • Affilations
    • News >
      • Breaking News
      • Past News
    • Code of Conduct
    • Bylaws
  • Events
    • Upcoming Events
    • Previous Events
  • Resources
    • 2023 PCA Travel Award >
      • 2022 Awardees
    • Job Posts
    • Fellowships
    • Publications >
      • 2022 Plant Physiology Focus Issue
    • PCA Videos
    • Annual Report
  • Outreach
    • JR Biotek-PCA Best Talk Winner
    • PCA Art Exhibit >
      • About
      • Plant Biotechnology
      • Black Plant Scientists
      • Bowie State University
      • Howard University
      • Morgan State University
    • Futurum Brochure
  • Contact