Objectives |
Registration |
The second part of the two-part workshop on Single Cell Sequencing Techniques in Plant Biology. This workshop aims to introduce well-established methods and approaches to analyzing scRNA-seq data. Specifically, it seeks to present a compilation of minimum considerations required to analyze and store scRNA-seq results, including QC assessment of the raw and processed data, clustering, differential gene expression, and annotation. It will also provide a look at cutting-edge strategies for multi-modal data integration and its application. Finally, the workshop will offer opportunities for speakers and participants to discuss sc-RNA-seq technologies in plant-specific systems.
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Registration is closed for the Single Cell Sequencing Techniques in Plant Biology Part 2: Data Analysis workshop.
Date: November 30, 2023 Workshop Times PST - 7:55am - 12:40pm MST - 8:55am - 1:40pm CST - 9:55am - 2:40pm EST - 10:55am - 3:40pm CET - 4:55pm - 9:40pm GMT+8 - 11:55am (12/1/23)- 4:40am (12/1/2023) Search for your time zone here. Workshop Organizers and Speakers |
Speakers
- Sina Booeshaghi (University of California, Berkeley, USA)
- Robin Buell (University of Georgia, USA)
- Hongyu Chen (Zhejiang University, China)
- Benjamin Cole (Joint Genome Institute, USA)
- Bert de Rybel (VIB Center for Plant Systems Biology/Ghent University, Belgium)
- Andrew Farmer (National Center for Genome Resources, USA)
- Che-Wei Hsu (Duke University, USA)
- Irene Papatheodorou (EMBL-European Bioinformatics Institute, UK)
Tentative Agenda
7:55 AM - 8:00 AM PST
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Opening Remarks
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8:00 AM - 8:25 AM PST
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Talk Topic: Introduction to scRNA-seq its applications
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8:30 AM - 8:45 AM PST
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Talk Topic: Creating and reading metadata
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8:50 AM - 9:40 AM PST
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Talk Topic: From raw data to count matrix
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9:50 AM - 10:00 AM PST
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Break
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10:00 AM - 10:50 AM PST
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Talk Topic: From count matrix to Clusters
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11:00 AM - 11:50 AM PST
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Talk Topic: Beyond scRNA-seq
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12:00 AM - 12:10 AM PST
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Break
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12:10 AM - 12:40 AM PST
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Panel Discussion/Closing Remarks
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