Workshop Description
The goal of the Plant Cell Atlas (PCA) is to bring together a community who will comprehensively describe plant cell types by integrating high-resolution subcellular and cellular location information of nucleic acids, proteins, and metabolites. Microscopy is a fundamental tool for many plant biologists as they seek to answer biological questions involving cellular dynamics, tissue organization, mutant effects, plant-microbe interactions, environmental stimulus and developmental studies, to name just a few.
This PCA Imaging Workshop is designed to introduce the basics of FIJI, a free and open source software platform, to beginner and intermediate plant microscopists. It will cover topics ranging from importing, quantifying, and visualizing 2D, 3D, 4D and time-lapse image datasets. Participants will have the opportunity to pre-install FIJI and work along with the instructors with test datasets. Tips, tricks and best practices will also be provided. This webinar is the first in a series of more advanced plant image processing topics, to include 3D segmentation in FIJI and Morphographx and applications of artificial intelligence (AI) for plant image segmentation.
This PCA Imaging Workshop is designed to introduce the basics of FIJI, a free and open source software platform, to beginner and intermediate plant microscopists. It will cover topics ranging from importing, quantifying, and visualizing 2D, 3D, 4D and time-lapse image datasets. Participants will have the opportunity to pre-install FIJI and work along with the instructors with test datasets. Tips, tricks and best practices will also be provided. This webinar is the first in a series of more advanced plant image processing topics, to include 3D segmentation in FIJI and Morphographx and applications of artificial intelligence (AI) for plant image segmentation.
Registration
When: Sep 24, 2025 10:30 AM Eastern Time (US and Canada)
Topic: PCA Imaging Workshop Webinar Series: FIJI Basics for Visualizing and Quantifying Plant Images
Register in advance for this webinar:
https://msu.zoom.us/webinar/register/WN_s8-YGU48S7ylsd5Q0EeGqQ
Join from an H.323/SIP room system:
H.323:
144.195.19.161 (US West)
206.247.11.121 (US East)
115.114.131.7 (India Mumbai)
115.114.115.7 (India Hyderabad)
159.124.15.191 (Amsterdam Netherlands)
159.124.47.249 (Germany)
159.124.104.213 (Australia Sydney)
159.124.74.212 (Australia Melbourne)
170.114.180.219 (Singapore)
64.211.144.160 (Brazil)
159.124.132.243 (Mexico)
159.124.168.213 (Canada Toronto)
159.124.196.25 (Canada Vancouver)
170.114.194.163 (Japan Tokyo)
147.124.100.25 (Japan Osaka)
Meeting ID: 969 7339 5678
SIP: [email protected]
After registering, you will receive a confirmation email containing information about joining the webinar.
Topic: PCA Imaging Workshop Webinar Series: FIJI Basics for Visualizing and Quantifying Plant Images
Register in advance for this webinar:
https://msu.zoom.us/webinar/register/WN_s8-YGU48S7ylsd5Q0EeGqQ
Join from an H.323/SIP room system:
H.323:
144.195.19.161 (US West)
206.247.11.121 (US East)
115.114.131.7 (India Mumbai)
115.114.115.7 (India Hyderabad)
159.124.15.191 (Amsterdam Netherlands)
159.124.47.249 (Germany)
159.124.104.213 (Australia Sydney)
159.124.74.212 (Australia Melbourne)
170.114.180.219 (Singapore)
64.211.144.160 (Brazil)
159.124.132.243 (Mexico)
159.124.168.213 (Canada Toronto)
159.124.196.25 (Canada Vancouver)
170.114.194.163 (Japan Tokyo)
147.124.100.25 (Japan Osaka)
Meeting ID: 969 7339 5678
SIP: [email protected]
After registering, you will receive a confirmation email containing information about joining the webinar.
