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Assistant Professor - Plant Systems Biology

10/23/2023

 
Apply
Institution
Iowa State University
Location
Ames, IA, USA
Apply By
December 1, 2023 for full consideration

Description
As part of a campus-wide strategic faculty hiring initiative in the emerging research area
of climate science and sustainability, the Department of Genetics, Development and Cell Biology at Iowa State University seeks to hire an assistant professor in Plant Systems Biology. The applicant is expected to use modern genetic and genomics approaches such as genome editing, single-cell RNA-seq, multi-omics, computational modeling, network analysis and/or predictive phenomics. Research topics may include but are not limited to understanding how plants respond to abiotic stresses such as drought, heat, cold, and/or biotic stresses such as bacterial, fungal and insect challenges, plant signaling networks, and a long-term goal of developing resilient crops. The incumbent has the opportunity to address fundamental plant biology questions related to agricultural sustainability and to collaborate with scientists across the ISU campus including in the Crop Bioengineering Center and the Plant Sciences Institute.

Required Qualifications
  • Ph.D. in biological sciences at the time of appointment OR Ph.D. in other fields
with 1+ years of postdoctoral research in biological sciences.

Preferred Qualifications
  • Strong potential for conducting and publishing innovative research in an appropriate research topic in plant systems biology.
  • Postdoctoral experience using contemporary genetics and genomics approaches
  • Strong record of research success and productivity.
  • Commitment to enhancing existing research strengths at ISU such as by engaging in interdisciplinary or collaborative research.
  • Teaching experience and/or commitment to student-centric teaching and to mentoring.
  • Potential for success in securing extramural funding.

Candidates should submit a cover letter, CV, a statement of research plans (3 pages max), a teaching and mentoring statement (1 page max) and the names and contact information for three referees.

Genomics Data Scientist Single Cell Sequencing

8/18/2023

 
Closed
Institution
Bayer
Location
Chesterfield, Missouri, USA
Salary Range
$103,000/yr - $154,000/yr USD

Description
As part of a collaboration project focused on single cell sequencing for agricultural biology, we are seeking a passionate and creative scientist to join the Crop Science Plant Biotechnology genomics team. This two-year position will be focused on cutting edge functional genomics analysis to generate insights into the genome biology of various eukaryotic systems. This genomics data scientist will be part of an interdisciplinary team with expertise in Cell Biology, Genomics, and Data Science to move forward specific high-impact projects for crop science.

The ideal candidate will be able to implement cloud-based genomics pipelines and improve and optimize them; be able to generate insights from genomic data on various eukaryotic systems; work well with cross-disciplinary and global teams; and be able to articulate findings and integrate his/her work into the established R&D teams.

Responsibilities
  • Provide technical contributions in a fast-paced team environment to accelerate our efforts on building an analytics-driven product pipeline.
  • Independently perform statistical analysis, computer programming, predictive modeling and experimental design.
  • Build cross-functional relationships to collaboratively partner with the business and effectively network amongst diverse scientific disciplines within data science, genomics, and biotechnology-based communities.
  • Contribute to the development of code, bioinformatic analyses pipelines, computational tools, and databases for mining and visualizing large genomic data sets.
  • Develop sustainable, consumable, accurate, and impactful reporting on model inputs, model outputs, observed outputs, business impact, and key performance indicators.
  • Present compelling, validated stories to all levels of organization, including peers, senior management, and internal customers to drive both strategic and operational changes in business.
Qualifications
  • PhD in a relevant domain, including genomics, computational biology, molecular biology & genetics, etc.
  • Educational preparation or applied experience in at least one of the following areas: Machine Learning, Statistical Genetics, Statistics, Biostatistics, Bioinformatics, Genomics, Computational Biology or other related quantitative discipline.
  • Demonstrates intermediate proficiency in computational skills and level of experience analyzing large datasets and/or building data models using R, Python or other statistical and/or mathematical programming packages.
  • Demonstrates basic understanding of software development best practices (Version Control, Code Documentation & Review, Cloud Based Sequence Analysis, Database Management).
  • Intermediate proficiency in machine learning algorithms and concepts.
  • Experience in successful delivery of valuable analysis through application of domain knowledge.
  • Strong communication competencies including presentations and delivery of complex quantitative analyses in a clear, concise and actionable manner to extended team and small groups of key stakeholders.

Post-Doctoral Research Associate - Single-Cell Computational Biology (Libault Lab)

5/25/2023

 
Closed
Institution
University of Nebraska-Lincoln
Location
Lincoln, Nebraska, USA
Open Date
May 23, 2023
For full consideration apply by:
June 26, 2023

Description
The University of Nebraska-Lincoln, Institute of Agriculture and Natural Resources, Department of Agronomy and Horticulture, Center for Plant Science Innovation invites applications for a Post-Doctoral Research Associate position in plant single-cell computational biology in the Libault Lab. This 12-month (calendar year), full-time special appointment will focus on expertise in bioinformatics, computational biology, machine learning, and plant genomics. The apportionment is 100% research.

The Libault lab seeks to explore and understand the network of plant genes, and their regulation in response to environmental stress at the single-cell level. These discoveries will lead to the development of new strategies to improve crop characteristics and performance. Therefore, using single-cell-omics datasets, the postdoctoral associate will work on genomics, epigenetics, and/or bioinformatics/computational biology to characterize and functionally validate plant cell-type-specific transcriptional programs, their regulation in response to environmental stresses, and their differential regulation between plant species.

Qualifications
A Ph.D. in plant computational biology/genomics, bioinformatics, machine learning, or a related field is required at the time of hiring. Prior knowledge and demonstrated expertise in next-generation sequencing data analysis, computational systems biology, and/or data integration, excellent oral and written communication skills, and the ability to work in a team are also required.

Preference will be given to candidates with a solid knowledge of plant genomics, evolution, gene
expression/regulation, and biological networks.

Postdoctoral Visiting Scientist – Single-Cell and Spatial Genomics

3/7/2023

 
Closed
Institution
Corteva Agriscience
Location
Des Moines, Iowa, USA

Description
Corteva Agrisciences has an exciting opportunity for a Postdoctoral Visiting Scientist to serve as an integral member of a team focused on implementing single-cell and spatial transcriptomics technologies and applying those technologies to conduct novel research towards the discovery of genetic and epigenetic factors driving plant tissue and cell’s responses to various internal and external inducers. The role will require strong technical skills, an ability to communicate with other scientists to accomplish objectives, and strong management skills to deliver on various technical projects. The position will be part of the Genome Sciences group, located in Johnston, IA, in the Des Moines metro area.

The ideal candidate will have strong molecular biology skills, including a deep knowledge of single-cell genomics-based applications, along with a proven familiarity with next-generation DNA & RNA sequencing technologies. The postdoctoral scientist will lead efforts to implement new single-cell and spatial platforms and technologies, conducting research and analyzing results to determine best outcomes and methodologies for various crop-related projects of interests. The postdoctoral scientist will be encouraged to communicate research outcomes through publication in peer-reviewed journals, participation in scientific community working groups, and presentations at key scientific conferences. This is an exciting opportunity where the candidate will be given direct access to a variety of cutting-edge technologies, and the opportunity to collaborate with world-class plant and molecular biology scientists.

Qualifications
  • Ph.D. in plant biology, genomics, molecular biology, or related scientific field
  • Demonstrated experience in single cell/protoplast/nuclei manipulation in plant, molecular biology, and functional genomics
  • Knowledge of plant cellular biology and bioinformatics (R, Python…)
  • Previous exposure to tissue preparation and microscopy would be a plus
  • Demonstrated ability for protocol testing and development, along with experiment planning, execution, and troubleshooting
  • Ability to work independently with minimal supervision and in a collaborative team environment
  • Excellent verbal and written communication skills, ability to disseminate complex technical issues in a clear, concise manner to a variety of audiences

Postdoctoral Fellow (Otegui Lab)

1/30/2023

 
More Info
Institution
University of Wisconsin-Madison
Location
Madison, WI, USA
Close Date
Until filled

Description
A postdoctoral position is available immediately at University of Wisconsin-Madison. A highly motivated individual is sought to analyze molecular and cellular changes associated with desiccation tolerance in plants and other organisms. These studies will integrate advanced light and electron tomography imaging with molecular genetics and biochemistry, in the laboratory of Dr. Marisa Otegui.

The postdoctoral fellow will be a member of the Water and Life Interface Institute (WALII). WALII studies how life interacts with water, from the molecular to the organismal level, across plants, fungi, and animals. WALII is a virtual institute, with scientists located at nine research facilities across the United States. Working together, WALII team members aim to uncover the rules by which organisms interact with water, exploring four integrated themes: 1) the physical and molecular determinants that allow organisms to survive in the solid state; 2) rehydration responses in desiccation-tolerant and -sensitive systems; 3) the molecular grammar of desiccation tolerance conferred by intrinsically disordered proteins; and 4) the short- and long-term evolutionary history of desiccation tolerance. WALII team members have diverse expertise, ranging from biophysics to plant biology, and experience with several desiccation-tolerant and -sensitive systems.

Qualifications
  • Ph.D. in biochemistry, cell biology, imaging, plant biology, genetics, or a related field.
  • Experience with microscopy imaging.
  • Excellent written and oral presentation skills and the ability to work collaboratively with others.
Preferred Qualifications
Experience with transmission electron microscopy and cryo-electron microscopy.

Postdoctoral Fellow (Exposito-Alonso Lab)

1/30/2023

 
More Info
Institution
University of California, Berkeley
Location
Berkley, CA, USA
Salary
$65,000 / year
Open Date
November 2022
Close Date
Until filled

Description
The Exposito-Alonso Laboratory seeks to recruit a highly motivated and skilled researcher with training in molecular biology, plant genetics, or bioengineering. We aim to understand the impacts of climate change on plant species, from a molecular evolution angle. The project will leverage ecological genomics modeling to identify genes involved in dehydration tolerance and water use efficiency in Arabidopsis, and will use CRISPR-based genetic engineering, developmental genetics, and microscopy techniques to understand the molecular mechanism of such adaptive genes.

The postdoctoral fellow will be a member of the Water and Life Interface Institute (WALII). WALII studies how life interacts with water, from the molecular to the organismal level, across plants, fungi, and animals. WALII is a virtual institute, with scientists located at nine research facilities across the United States. Working together, WALII team members aim to uncover the rules by which organisms interact with water, exploring four integrated themes: 1) the physical and molecular determinants that allow organisms to survive in the solid state; 2) rehydration responses in desiccation-tolerant and -sensitive systems; 3) the molecular grammar of desiccation tolerance conferred by intrinsically disordered proteins; and 4) the short- and long-term evolutionary history of desiccation tolerance. WALII team members have diverse expertise, ranging from biophysics to plant biology, and experience with several desiccation-tolerant and -sensitive systems.

Responsibilities
  • The position requires leading research independently, preparing publications, and presenting research in scientific meetings. Postdocs in the lab are also examples and mentors to graduate students.
  • Designing and conducting phenotyping of dehydration traits in experiments in the greenhouse and/or field.
  • Willingness to work closely with lab members, and initiative to be an active member of WALII.
  • Contributing to lab-wide chores towards a productive and positive lab.

Qualifications
  • BSc + PhD in any of the following areas: molecular biology, biochemistry, cell biology, genetics, bioengineering.
  • A track record of research productivity and independence.

CROPPS DEI Specialist

11/4/2022

 
Closed
Institution
Cornell University
Location
Ithaca, NY, USA

Description
The Center for Research on Programmable Plant Systems (CROPPS) is an NSF Science and Technology Center that is administered under the Office of the Vice Provost for Research and Innovation. CROPPS has a mission to develop new technologies that can be used to create a two-way communication system with plants and their associated organisms for the benefit of scientific research, industry and agriculture.  Alongside research, CROPPS pursues related and complementary initiatives in education, public communication, and diversity, equity and inclusion. CROPPS aims to create an inclusive environment for productive collaboration across disciplines, titles (faculty, students, and staff), and personal identities.

CROPPS seeks a DEI Specialist who will report to both the CROPPS Managing Director and the Associate Director for Diversity & Inclusion, working closely with the rest of the CROPPS leadership. The CROPPS DEI Specialist will partner with the Associate Director to plan, coordinate, execute, and document initiatives for growing diversity in the graduate student, undergraduate student, postdoctoral and faculty populations participating in CROPPS. The CROPPS Diversity Specialist will manage and track day-to-day outreach, recruitment, and retention efforts. They will communicate with CROPPS partner institutions’ offices of student disability, diversity and inclusion, and counseling services (or equivalent) to ensure that all necessary accommodations are made to provide equal opportunities and resources to CROPPS students. They will coordinate visits, events, and activities that support the development of long-term relationships with Historically Black Colleges and Universities (HBCUs) and other Minority-Serving Institutions (MSIs). They will serve as a resource linking CROPPS participants with groups and programs that support informal and formal professional mentorship training for undergraduate students, graduate students, postdoctoral scholars, and faculty. Finally, they will compile materials and write content for the NSF annual report and for evaluation by advisory groups.

Qualifications
Individuals considering this position should have a bachelor’s degree and 3 to 5 years relevant experience or equivalent combination.  Individual must be a strong communicator; someone who can perform independently; and they must be a skilled team collaborator.  It is required the individual be able to communicate with and serve a diverse population of individuals spread across multiple states. The individual must be adaptable, flexible, and service-oriented, work well under pressure, and maintain an attention to detail at all times.  They must possess the capacity to maintain confidentiality of staff and student sensitive data.  Some background and prior experience in Diversity, Equity, and Inclusion issues.

Postdoctoral Scholar (Leiboff Lab)

11/4/2022

 
More Info
Institution
Oregon State University
Location
Corvallis, OR, USA

Description
A postdoctoral scholar position is open in the laboratory of Dr. Samuel Leiboff for the genetic investigation of maize vein development. Veins transport solutes/water between organs and are therefore essential for addressing society’s need for improved agricultural and bioenergy performance during future environmental challenges. Recent genetic evidence in maize shows unanticipated physiological and genetic diversity amongst veins as demonstrated by the existence of specialized vein mutants. Many of these mutants are unmapped and their mechanism of action is unknown. Although each vein’s anatomical development is stereotyped, vein initiation events
are dynamic over the life of each plant and vary in position and developmental behavior within domains of the same organ. We seek a developmental biologist to join our team and shape the mechanistic investigation of the previously secret genetic language that defines maize veins.

We are currently engaged in single cell genomic and quantitative genetic investigations exploring the production of specialized veins at a genome-wide scale. The applicant will be responsible for the evaluation of candidate cell-specific markers and vein patterning alleles that are discovered by single cell RNA sequencing and GWAS. No prior informatics, machine learning, or quantitative genetics training is required, but would be available, should the applicant desire interdisciplinary training.

Qualifications
The applicant is required to have a recent Ph.D. in the biological sciences related to plant developmental biology, molecular biology, genetics, or genomics. Required skills include basic molecular biology, plant histology, microscopy, and genetic analysis.

Postdoctoral Associates (Baxter & Mockler Labs)

11/4/2022

 
Closed
Institution
Donald Danforth Plant Science Center
Location
Saint Louis, MO, USA

Description
The Baxter Lab and Mockler Lab at the Donald Danforth Plant Science Center are recruiting multiple enthusiastic postdoctoral associates to work on a DOE-funded project studying the response to abiotic stresses in Sorghum and Setaria. Candidates will work at the nexus of phenotyping, quantitative genetics, comparative genetics, and genomics. Large datasets from field and controlled environment phenotyping, genome sequencing, and transcriptomics are available, and more will be produced during the project.

Qualifications
  • Ph.D. in a field related to plant bioinformatics (i.e., plant biology, quantitative genetics, bioinformatics, genomics, computer science, statistics) is required
  • Experience in data science/bioinformatics, genomic data analysis, and statistical approaches

2 Postdoctoral Fellows (Jackson Lab)

11/4/2022

 
More Info
Institution
Cold Spring Harbor Laboratory
Location
Cold Spring Harbor, NY, USA

Description
The first position is to follow up on recent work using CRISPR editing of
regulatory elements to explore mechanisms of gene regulation in yield related
genes, and fine tune agronomic traits. Recent work from our collaborators has
started to identify deeply conserved cis-regulatory sequences in diverse plant
families, and these will be targeted by genome editing to test effects on maize
development and yield traits.

The second position aims to characterize the role of plasmodesmata in
plant development, focusing on cell to cell trafficking of the KNOTTED1/ STM
class of homeodomain proteins and associated mRNAs.

The Jackson Lab uses state of the art developmental biology, imaging and genomic
techniques to understand signaling in meristem development, using arabidopsis
and maize as model systems.
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